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Genomics

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Total of 8 entries
Showing up to 25 entries per page: fewer | more | all

Fri, 21 Jun 2024 (showing 5 of 5 entries )

[1] arXiv:2406.14307 [pdf, html, other]
Title: QuST-LLM: Integrating Large Language Models for Comprehensive Spatial Transcriptomics Analysis
Chao Hui Huang
Comments: 12 pages, 7 figures
Subjects: Genomics (q-bio.GN); Computation and Language (cs.CL); Computer Vision and Pattern Recognition (cs.CV)
[2] arXiv:2406.14187 [pdf, other]
Title: A mapping-free NLP-based technique for sequence search in Nanopore long-reads
Tomasz Strzoda, Lourdes Cruz-Garcia, Mustafa Najim, Christophe Badie, Joanna Polanska
Comments: 25 pages, 9 figures
Subjects: Genomics (q-bio.GN)
[3] arXiv:2406.14432 (cross-list from q-bio.PE) [pdf, html, other]
Title: Inverse population genetic problems with noise: inferring extent and structure of haplotype blocks from point allele frequencies
Oliver Keatinge Clay
Comments: 7 pages, 2 figures
Subjects: Populations and Evolution (q-bio.PE); Genomics (q-bio.GN)
[4] arXiv:2406.13839 (cross-list from q-bio.BM) [pdf, html, other]
Title: RNA-FrameFlow: Flow Matching for de novo 3D RNA Backbone Design
Rishabh Anand, Chaitanya K. Joshi, Alex Morehead, Arian R. Jamasb, Charles Harris, Simon V. Mathis, Kieran Didi, Bryan Hooi, Pietro Liò
Comments: To be presented as an Oral at ICML 2024 Structured Probabilistic Inference & Generative Modeling Workshop, and a Spotlight at ICML 2024 AI4Science Workshop
Subjects: Biomolecules (q-bio.BM); Machine Learning (cs.LG); Genomics (q-bio.GN)
[5] arXiv:2406.13133 (cross-list from cs.CL) [pdf, html, other]
Title: PathoLM: Identifying pathogenicity from the DNA sequence through the Genome Foundation Model
Sajib Acharjee Dip, Uddip Acharjee Shuvo, Tran Chau, Haoqiu Song, Petra Choi, Xuan Wang, Liqing Zhang
Comments: 9 pages, 3 figures
Subjects: Computation and Language (cs.CL); Machine Learning (cs.LG); Genomics (q-bio.GN)

Wed, 19 Jun 2024 (showing 1 of 1 entries )

[6] arXiv:2406.12064 [pdf, html, other]
Title: skandiver: a divergence-based analysis tool for identifying intercellular mobile genetic elements
Xiaolei Brian Zhang, Grace Oualline, Jim Shaw, Yun William Yu
Comments: 9 pages, 6 figures
Subjects: Genomics (q-bio.GN)

Tue, 18 Jun 2024

No updates for this time period.

Mon, 17 Jun 2024 (showing 1 of 1 entries )

[7] arXiv:2406.09522 [pdf, other]
Title: AOC: Analysis of Orthologous Collections -- an application for the characterization of natural selection in protein-coding sequences
Alexander Lucaci, Sergei Pond
Subjects: Genomics (q-bio.GN); Populations and Evolution (q-bio.PE)

Fri, 14 Jun 2024 (showing 1 of 1 entries )

[8] arXiv:2406.09159 (cross-list from q-bio.QM) [pdf, other]
Title: ALPHAGMUT: A Rationale-Guided Alpha Shape Graph Neural Network to Evaluate Mutation Effects
Boshen Wang, Bowei Ye, Lin Xu, Jie Liang
Comments: 2 figures, 2 tables
Subjects: Quantitative Methods (q-bio.QM); Artificial Intelligence (cs.AI); Computational Geometry (cs.CG); Genomics (q-bio.GN)
Total of 8 entries
Showing up to 25 entries per page: fewer | more | all